Welcome to the OPATs website

 

Introduction:

OPATs (Omnibus P-value Association Tests), programmed in R and R GUI and featured by user-friendly interfaces, is an integrated analysis tool for identifying disease-associated genomic segments, functional genes, and biological pathways in genome-wide association studies. In addition to analysis modules for data quality control and single-locus association tests, OPATs provides three types of set-based association test: window-based association test (WBAT), gene-based association test (GBAT), and biopathway-based association test (BBAT). The significance of a set-based association test was evaluated by using resampling procedures.

 

Contact:

Please kindly acknowledge if you have downloaded OPATs. We will inform you the update of OPATs. Any questions, comments and suggestions on OPATs are welcome. Please send your feedback to hsinchou@stat.sinica.edu.tw.

 

Download:

VERSION

DOWNLOAD LINKS

FILE TYPE

FILE SIZE

UPDATE

OPATs 1.0

Software

RAR

2.21 MB

2017-05-13

 

User Guide

PDF

760 KB

2017-05-13

Required tools: (1) R language; (2) Rtools (for Windows only); (3) ActiveTcl8.5; (4) PLINK

wbat gbat bbat wbat_m wbat_h gbat_ext bbat_sl bbat_gl at ts ar qc_i qc_m sla_m sla_t