OPATs(Omnibus P-value Association Tests), programmed in R and R GUI and
featured by user-friendly interfaces, is an integrated analysis tool for identifying
disease-associated genomic segments, functional genes, and biological
pathways in genome-wide association studies. In addition to analysis modules
for data quality control and single-locus association tests, OPATs provides
three types of set-based association test: window-based association test
(WBAT), gene-based association test (GBAT), and biopathway-based association
test (BBAT). The significance of a set-based association test was evaluated
by using resampling procedures.
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