A Pattern Recognition Approach to Infer time-lagged Genetic Interactions (PARE)

Cheng-Long Chuang^1,2, Chih-Hung Jen³, Chung-Ming Chen¹ and Grace S. Shieh^2,*

¹ Institute of Biomedical Engineering, National Taiwan University, Taipei, Taiwan
² Institute of Statistical Science, Academia Sinica, Taipei, Taiwan
³ Genome Research Center, National Yang-Ming University, Taipei, Taiwan.

^* E-mail address: gshieh@stat.sinica.edu.tw

Supplementary Files

1. Flowchart of PSO algorithm	pso.pdf
2. List of transcriptional interactions (TIs)	TI.pdf
3. Reference of existing pathways	References of existing pathways.pdf
4. Descriptions about qRT-PCR experiments	qRT_PCR.pdf
5. Preliminary test on TC/TD gene pairs	Chisquare-TCTD.pdf
6. Preliminary test on TIs	Chisquare-TI.pdf

　

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